pygrenade_vx.network.abstract.multicompartment.morphology_builder.Neuron

class pygrenade_vx.network.abstract.multicompartment.morphology_builder.Neuron

Bases: object

Multicompartment-Neuron class.

This is not the fully implemented neuron but contains the necessary data to construct a neuron in the final implementation from it.

__init__()

Initialize self. See help(type(self)) for accurate signature.

Methods

construct_parameter_space(lower_limits, …)	Construct a parameter space with the given limits.
construct_parameterization(values)	Construct a parameterization with the given values.
reverse_translate(native_parameters)	Return the neuron parameters.
translate(parameters[, copy])	Return the neuron parameters.

Attributes

compartment_ids_grenade
compartments
connection_ids_grenade
connections
default_parameters
mechanisms_ids_grenade
translations

compartment_ids_grenade = {}

compartments = {}

connection_ids_grenade = {}

connections = []

classmethod construct_parameter_space(lower_limits: Dict[str, Any], upper_limits: Dict[str, Any])

Construct a parameter space with the given limits.

Lower_limits

Dictionary with lower limits. The key should be the full label to the different parameters.

Lower_limits

Dictionary with upper limits. The key should be the full label to the different parameters.

Returns

Parameter space with the given limits.

classmethod construct_parameterization(values: Dict[str, Any])

Construct a parameterization with the given values.

Parameters

values – Dictionary with values. The key should be the full label to the different parameters.

Returns

Parameterization of the neuron.

default_parameters = {}

mechanisms_ids_grenade = {}

reverse_translate(native_parameters)

Return the neuron parameters.

Overwritten to prevent a translation to itself to increase performance.

Parameters

native_parameters – Parameters of the neuron.

Returns

Paramters of the neuron.

translate(parameters, copy=True)

Return the neuron parameters.

Overwritten to prevent a translation to itself to increase performance.

Parameters

• parameters – Parameters of the neuron.

• copy – If true return a copy of the paramters.

Returns

Parameters of the neuron.

translations = {}