pynn_brainscales.brainscales2.morphology

Modules

pynn_brainscales.brainscales2.morphology.builder
pynn_brainscales.brainscales2.morphology.mc_neuron_base
pynn_brainscales.brainscales2.morphology.mechanisms	Mechanisms which can be placed on the compartments.
pynn_brainscales.brainscales2.morphology.parameters
pynn_brainscales.brainscales2.morphology.parts

Classes

CompartmentBuilder()	Construct a new compartment class.
Connection(source, target[, strength])	Connection that contains source and target of a connection.
Iterable()
McCircuitParameters(value)	Represents the parameters of a single multi-compartmental neuron.
McNeuronManualBase(**parameters)	Base class for manually constructed multi-compartmental neuron models.
MorphologyBuilder()
PlacedCompartment(*, positions, label, …)	A single iso-potential compartment of a multi-compartmental neuron model.
SharedLineConnection(start, stop, row)

Functions

pynn_brainscales.brainscales2.morphology.create_mc_neuron(name: str, compartments: List[pynn_brainscales.brainscales2.morphology.parts.PlacedCompartment], connections: Optional[List[pynn_brainscales.brainscales2.morphology.parts.SharedLineConnection], None] = None, single_active_circuit: bool = False) → pynn_brainscales.brainscales2.morphology.mc_neuron_base.McNeuronManualBase

Create a multi-compartment neuron class from manually placed compartments.

This methods uses manually placed compartments, checks that the configuration is valid and generates a neuron class. Furthermore, the connection between the different neuron circuits has to be defined manually.

Parameters

• name – Name of the newly created class.

• compartments – Compartments of the multi-compartment neuron.

• connections – Specifies where the shared line is connected.

• single_active_circuit – Disable leak, capacitance and threshold for all but the first circuit in each compartment.

Returns

Class for a multi-compartmental neuron model with the given compartments and connections.